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科学家通过多维度GWAS和molQTL分析探索鸡体重的年龄依赖性遗传结构
作者:小柯机器人 发布时间:2024/9/20 17:42:36

中国农业大学杨宁等研究人员合作通过多维度GWAS和molQTL分析探索鸡体重的年龄依赖性遗传结构。相关论文于2024年9月19日在线发表于国际学术期刊《遗传学报》。

研究人员通过整合分析30个年龄点和27种组织的5个数量性状位点(QTL),构建了鸡体重(BW)的全面遗传图谱。研究人员发现,鸡的生长是一个累积的非线性过程,可分为三个不同阶段。全基因组关联研究(GWAS)分析显示,与体重相关的遗传变异在这三个阶段呈现有序模式。

染色体1上的遗传变异可能通过调节特异于下丘脑的SLC25A30表达和视网膜的NEK3表达来调控整体生长过程。此外,染色体4和染色体27上的遗传变异可能分别在阶段Ⅱ(8-22周)和阶段Ⅲ(23-72周)中发挥主导作用调控BW。总之,该研究呈现了调控鸡BW发育阶段性变化的全面遗传图谱,为育种计划中的基因组选择提供了重要资源。

据介绍,鸡BW是育种中的关键性状。尽管通过GWAS已经调查了与体重相关的遗传变异,但在鸡中,因果变异的贡献及其分子机制仍然不明确。

附:英文原文

Title: Age-dependent genetic architectures of chicken body weight explored by multidimensional GWAS and molQTL analyses

Author: Congjiao Sun a, Ning Yang a

Issue&Volume: 2024/09/19

Abstract: Chicken body weight (BW) is a critical trait in breeding. Although genetic variants associated with BW have been investigated by genome-wide association studies (GWAS), the contributions of causal variants and their molecular mechanisms remain largely unclear in chickens. In this study, we construct a comprehensive genetic atlas of chicken BW by an integrative analysis of 30 age points and 5 quantitative trait loci (QTL) across 27 tissues. We find that chicken growth is a cumulative non-linear process, which can be divided into three distinct stages. Our GWAS analysis reveals that BW-related genetic variations show ordered patterns in these three stages. Genetic variations in chromosome 1 may regulate the overall growth process, likely by modulating the hypothalamus-specific expression of SLC25A30 and retina-specific expression of NEK3. Moreover, genetic variations in chromosome 4 and chromosome 27 may play dominant roles in regulating BW during stage Ⅱ (8-22 weeks) and stage Ⅲ (23-72 weeks), respectively. In summary, our study presents a comprehensive genetic atlas regulating developmental stage-specific changes in chicken BW, thus providing important resources for genomic selection in breeding programs.

DOI: 10.1016/j.jgg.2024.09.003

Source: https://www.sciencedirect.com/science/article/pii/S1673852724002406

期刊信息

Journal of Genetics and Genomics《遗传学报》,创刊于1974年。隶属于爱思唯尔出版集团,最新IF:5.9

官方网址:https://www.sciencedirect.com/journal/journal-of-genetics-and-genomics
投稿链接:https://www2.cloud.editorialmanager.com/jgg/default2.aspx